PlantPromoterDB promoter information of AT2G20520.1
Summary of Gene (AT2G20520.1)
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Overview
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Focused view (chromosome 2: 8839413-8840612)
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Genome position
from initiation codon TSS from cDNA TSS information AT2G20520.1 5'->3' (+) Promoter sequence AT2G20515.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G20520.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 2 | + | 8840638 | -25 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 4 | - | 8839672 | AT2G20515.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | G | clone | - | 8839623 | AT2G20515.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | TAAGGGTA | - | 8839750 | 8839757 | AT2G20515.1 | ||||
| AtREG570 | TAAGGGTA | PPDB Motif | ACCCT | PLACE Motif | |||||
| REG | AAATGACG | - | 8839826 | 8839833 | AT2G20515.1 | ||||
| AtREG657 | AAATGACG | PPDB Motif | PLACE Motif | ||||||