PlantPromoterDB promoter information of AT2G20635.1

Summary of Gene (AT2G20635.1)

Organism	Arabidopsis thaliana
Chromosome	2
Locus	AT2G20635 TAIR NCBI
Gene model	AT2G20635.1
Description	ATP binding / protein kinase/ protein serine/threonine kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Mitotic checkpoint serine/threonine protein kinase, Bub1 (InterPro:IPR015661), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Mad3/BUB1 homology region 1 (InterPro:IPR013212), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: spindle checkpoint protein-related (TAIR:AT2G33560.1); Has 240 Blast hits to 240 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 109; Fungi - 80; Plants - 45; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

#

Overview

Focused view (chromosome 2: 8899410-8900609)

`Genome position from initiation codon` `TSS from cDNA TSS information AT2G20635.1 5'->3' (+) Promoter sequence AT2G20630.1 AT2G20630.2 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT2G20635.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG None None None

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	None	None	None

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 5 - 8899799 AT2G20630.2, AT2G20630.1

TSS peak A 17 - 8899699 AT2G20630.2, AT2G20630.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	5	-	8899799	AT2G20630.2, AT2G20630.1
TSS peak	`A`	17	-	8899699	AT2G20630.2, AT2G20630.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone G clone - 8899798 AT2G20630.2, AT2G20630.1

TSS clone A clone - 8899753 AT2G20630.2, AT2G20630.1

TSS clone C clone - 8899749 AT2G20630.2, AT2G20630.1

TSS clone T clone - 8899703 AT2G20630.2, AT2G20630.1

TSS clone A clone - 8899699 AT2G20630.2, AT2G20630.1

TSS clone G clone - 8899698 AT2G20630.2, AT2G20630.1

TSS clone T clone - 8899692 AT2G20630.2, AT2G20630.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`G`	clone	-	8899798	AT2G20630.2, AT2G20630.1
TSS clone	`A`	clone	-	8899753	AT2G20630.2, AT2G20630.1
TSS clone	`C`	clone	-	8899749	AT2G20630.2, AT2G20630.1
TSS clone	`T`	clone	-	8899703	AT2G20630.2, AT2G20630.1
TSS clone	`A`	clone	-	8899699	AT2G20630.2, AT2G20630.1
TSS clone	`G`	clone	-	8899698	AT2G20630.2, AT2G20630.1
TSS clone	`T`	clone	-	8899692	AT2G20630.2, AT2G20630.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box AATATAAAGA - 8899825 8899834 AT2G20630.1, AT2G20630.2

Y Patch CATCTCTC - 8899714 8899721 AT2G20630.1, AT2G20630.2

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`AATATAAAGA`	-	8899825	8899834	AT2G20630.1, AT2G20630.2
Y Patch	`CATCTCTC`	-	8899714	8899721	AT2G20630.1, AT2G20630.2
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None