Summary of Gene (AT2G20770.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT2G20770.1 5'->3' (+) Promoter sequence AT2G20760.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 13 | + | 8945356 | -24 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | + | 8945318 | -62 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTTTCTTCT | + | 8945328 | 8945336 | -52 | -44 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AAACGCTG | + | 8945207 | 8945214 | -173 | -166 | |||
AtREG626 | AAACGCTG | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
REG | ATGCCACGT | + | 8945260 | 8945268 | -120 | -112 | |||
AtREG448 | ATGCCACG | ABA, DREB1Aox | PPDB Motif |   | PLACE Motif | GCCAC  | |||
AtREG379 | TGCCACGT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | |||
REG | ACCGAACCGGTC | + | 8945293 | 8945304 | -87 | -76 | |||
AtREG451 | ACCGAACC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG456 | CCGAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG423 | CGAACCGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG528 | GAACCGGT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG552 | AACCGGTC | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 28 | - | 8945223 | AT2G20760.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | - | 8945222 | AT2G20760.1 |
TSS clone | G | clone | - | 8945212 | AT2G20760.1 |
TSS clone | T | clone | - | 8945175 | AT2G20760.1 |
TSS clone | A | clone | - | 8945168 | AT2G20760.1 |
TSS clone | A | clone | - | 8945162 | AT2G20760.1 |
TSS clone | T | clone | - | 8945139 | AT2G20760.1 |
TSS clone | T | clone | - | 8945131 | AT2G20760.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTCCTTCTCTT | - | 8945190 | 8945201 | AT2G20760.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | GACCGGTTCGGT | - | 8945293 | 8945304 | AT2G20760.1 | ||||
AtREG552 | GACCGGTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG528 | ACCGGTTC | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG423 | CCGGTTCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG456 | CGGTTCGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG451 | GGTTCGGT | PPDB Motif |   | PLACE Motif |   | ||||
REG | TAAACGACA | - | 8945317 | 8945325 | AT2G20760.1 | ||||
AtREG565 | TAAACGAC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG569 | AAACGACA | PPDB Motif |   | PLACE Motif |   | ||||
REG | CCGTTAAA | - | 8945360 | 8945367 | AT2G20760.1 | ||||
AtREG610 | CCGTTAAA | PPDB Motif |   | PLACE Motif | YAACKG, CNGTTR  | ||||
REG | CCGACCCG | - | 8945384 | 8945391 | AT2G20760.1 | ||||
AtREG375 | CCGACCCG | PPDB Motif | CCGAC  | PLACE Motif | CCGAC  |