PlantPromoterDB promoter information of AT2G21170.1
Summary of Gene (AT2G21170.1)
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Overview
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Focused view (chromosome 2: 9074106-9072907)
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Genome position
from initiation codon AT2G21172.1 TSS from cDNA TSS information AT2G21170.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G21170.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 59 | - | 9073169 | -63 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | - | 9073226 | -120 |
| TSS clone | T | clone | - | 9073203 | -97 |
| TSS clone | C | clone | - | 9073190 | -84 |
| TSS clone | C | clone | - | 9073187 | -81 |
| TSS clone | G | clone | - | 9073176 | -70 |
| TSS clone | T | clone | - | 9073171 | -65 |
| TSS clone | A | clone | - | 9073155 | -49 |
| TSS clone | T | clone | - | 9073154 | -48 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCTCCTCTT | - | 9073144 | 9073154 | -38 | -48 |
| Y Patch | TCTCCTCT | - | 9073192 | 9073199 | -86 | -93 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGCGCGTGA | - | 9073299 | 9073307 | -193 | -201 | |||
| AtREG486 | GGCGCGTG | PPDB Motif | ACGCGC | PLACE Motif | |||||
| AtREG395 | GCGCGTGA | PPDB Motif | ACGCGC | PLACE Motif | |||||
| REG | ACGTGACA | - | 9073310 | 9073317 | -204 | -211 | |||
| AtREG606 | ACGTGACA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| REG | AGCGCGTGGCAA | - | 9073322 | 9073333 | -216 | -227 | |||
| AtREG381 | AGCGCGTG | PPDB Motif | ACGCGC | PLACE Motif | |||||
| AtREG452 | CGTGGCAA | PPDB Motif | PLACE Motif | GCCAC | |||||
| REG | TTTTGGGC | - | 9073357 | 9073364 | -251 | -258 | |||
| AtREG529 | TTTTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||