Summary of Gene (AT2G22425.2)
|
Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AT2G22425.1 TSS from cDNA TSS information AT2G22425.2 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 21 | + | 9514939 | -140 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | + | 9514939 | -140 |
TSS clone | T | clone | + | 9514940 | -139 |
TSS clone | T | clone | + | 9514943 | -136 |
TSS clone | G | clone | + | 9514961 | -118 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCCAATAA | + | 9514678 | 9514685 | -401 | -394 | |||
AtREG417 | CCCAATAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GCCGGTTCACCCGGTTAT | + | 9514827 | 9514844 | -252 | -235 | |||
AtREG637 | GCCGGTTC | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG480 | CCGGTTCA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG455 | ACCCGGTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG548 | CCGGTTAT | PPDB Motif | AACCG(G/A)  | PLACE Motif | CNGTTR  | ||||
REG | ATCCGGTTTAC | + | 9514868 | 9514878 | -211 | -201 | |||
AtREG561 | ATCCGGTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG521 | TCCGGTTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG412 | CCGGTTTA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG519 | CGGTTTAC | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | TTAAACCGA | + | 9514881 | 9514889 | -198 | -190 | |||
AtREG473 | TTAAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG514 | TAAACCGA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |