PlantPromoterDB promoter information of AT2G22470.1
Summary of Gene (AT2G22470.1)
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Overview
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Focused view (chromosome 2: 9539795-9538596)
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Genome position
from initiation codon TSS from cDNA TSS information AT2G22470.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G22470.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 47 | - | 9538877 | -82 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 9538879 | -84 |
| TSS clone | C | clone | - | 9538876 | -81 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | GTATATATAGAG | - | 9538900 | 9538911 | -105 | -116 |
| Y Patch | CTCTCTTCTCTCAT | - | 9538886 | 9538899 | -91 | -104 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TTAAACCG | - | 9539007 | 9539014 | -212 | -219 | |||
| AtREG473 | TTAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | ACACGTCA | - | 9539046 | 9539053 | -251 | -258 | |||
| AtREG517 | ACACGTCA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| REG | AACACGTGGCAG | - | 9539120 | 9539131 | -325 | -336 | |||
| AtREG590 | AACACGTG | ABA, JA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| AtREG382 | ACACGTGG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| AtREG367 | CACGTGGC | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC | |||
| AtREG379 | ACGTGGCA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
| AtREG468 | CGTGGCAG | ABA | PPDB Motif | PLACE Motif | GCCAC | ||||
| REG | ACGTGTCA | - | 9539170 | 9539177 | -375 | -382 | |||
| AtREG389 | ACGTGTCA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||