PlantPromoterDB promoter information of AT2G22990
Summary of Gene (AT2G22990)
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Overview
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Focused view (chromosome 2: 9786071-9787270)
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Genome position
from initiation codon AT2G22990.2 AT2G22990.3 AT2G22990.4 AT2G22990.5 AT2G22990.6 TSS from cDNA TSS information AT2G22990 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G22990
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 4 | + | 9786218 | -853 |
| TSS peak | A | 38 | + | 9786368 | -703 |
| TSS peak | A | 4 | + | 9786603 | -468 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 9786316 | -755 |
| TSS clone | A | clone | + | 9786320 | -751 |
| TSS clone | A | clone | + | 9786365 | -706 |
| TSS clone | C | clone | + | 9786366 | -705 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TTTATAAAGA | + | 9786333 | 9786342 | -738 | -729 |
| Y Patch | TTCTTCTT | + | 9786568 | 9786575 | -503 | -496 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GCCCATCA | + | 9786027 | 9786034 | -1044 | -1037 | |||
| AtREG635 | GCCCATCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | CTTGGGCCTGG | + | 9786200 | 9786210 | -871 | -861 | |||
| AtREG505 | CTTGGGCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG356 | TTGGGCCT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG370 | TGGGCCTG | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG619 | GGGCCTGG | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| REG | AACCGGGTT | + | 9786506 | 9786514 | -565 | -557 | |||
| AtREG455 | AACCGGGT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG516 | ACCGGGTT | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||