PlantPromoterDB promoter information of AT2G23090.1

Summary of Gene (AT2G23090.1)

Organism	Arabidopsis thaliana
Chromosome	2
Locus	AT2G23090 TAIR NCBI
Gene model	AT2G23090.1
Description	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1909 (InterPro:IPR015023); Has 104 Blast hits to 104 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 33; Plants - 46; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).

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Overview

Focused view (chromosome 2: 9831274-9830075)

`Genome position from initiation codon` `TSS from cDNA TSS information AT2G23090.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT2G23090.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak C 30 - 9830347 -73

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`C`	30	-	9830347	-73

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone A clone - 9830408 -134

TSS clone T clone - 9830390 -116

TSS clone T clone - 9830383 -109

TSS clone T clone - 9830381 -107

TSS clone T clone - 9830377 -103

TSS clone T clone - 9830355 -81

TSS clone A clone - 9830351 -77

TSS clone A clone - 9830350 -76

TSS clone T clone - 9830349 -75

TSS clone C clone - 9830347 -73

TSS clone C clone - 9830346 -72

TSS clone A clone - 9830345 -71

TSS clone T clone - 9830339 -65

TSS clone G clone - 9830307 -33

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`A`	clone	-	9830408	-134
TSS clone	`T`	clone	-	9830390	-116
TSS clone	`T`	clone	-	9830383	-109
TSS clone	`T`	clone	-	9830381	-107
TSS clone	`T`	clone	-	9830377	-103
TSS clone	`T`	clone	-	9830355	-81
TSS clone	`A`	clone	-	9830351	-77
TSS clone	`A`	clone	-	9830350	-76
TSS clone	`T`	clone	-	9830349	-75
TSS clone	`C`	clone	-	9830347	-73
TSS clone	`C`	clone	-	9830346	-72
TSS clone	`A`	clone	-	9830345	-71
TSS clone	`T`	clone	-	9830339	-65
TSS clone	`G`	clone	-	9830307	-33

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box CATATAAATC - 9830376 9830385 -102 -111

Y Patch TTCTCTTCTTCCTCTTCT - 9830317 9830334 -43 -60

Y Patch TCTTTCTC - 9830385 9830392 -111 -118

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`CATATAAATC`	-	9830376	9830385	-102	-111
Y Patch	`TTCTCTTCTTCCTCTTCT`	-	9830317	9830334	-43	-60
Y Patch	`TCTTTCTC`	-	9830385	9830392	-111	-118
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG AAGGCCCATTAT - 9830495 9830506 -221 -232

AtREG353 AAGGCCCA     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354 AGGCCCAT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG361   GGCCCATT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG357    GCCCATTA PPDB Motif GCCCA PLACE Motif

AtREG546     CCCATTAT PPDB Motif PLACE Motif

REG TTTAACGGGCCTTAA - 9830523 9830537 -249 -263

AtREG610 TTTAACGG        PPDB Motif PLACE Motif YAACKG, CNGTTR

AtREG399   TAACGGGC      PPDB Motif ACGGGC PLACE Motif YAACKG, CNGTTR

AtREG401    AACGGGCC     PPDB Motif AAACG(C/G), ACGGGC, CCAACGG PLACE Motif GGGCC

AtREG429     ACGGGCCT    PPDB Motif ACGGGC PLACE Motif GGGCC

AtREG351       GGGCCTTA PPDB Motif GCCCA PLACE Motif GGGCC

AtREG416        GGCCTTAA PPDB Motif PLACE Motif

REG GTCGTTTA - 9830556 9830563 -282 -289

AtREG565 GTCGTTTA PPDB Motif PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`AAGGCCCATTAT`		-	9830495	9830506	-221	-232
	AtREG353	`AAGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG354	`AGGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG361	`GGCCCATT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG357	`GCCCATTA`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG546	`CCCATTAT`		PPDB Motif		PLACE Motif
REG	`TTTAACGGGCCTTAA`		-	9830523	9830537	-249	-263
	AtREG610	`TTTAACGG`		PPDB Motif		PLACE Motif	`YAACKG, CNGTTR`
	AtREG399	`TAACGGGC`		PPDB Motif	`ACGGGC`	PLACE Motif	`YAACKG, CNGTTR`
	AtREG401	`AACGGGCC`		PPDB Motif	`AAACG(C/G), ACGGGC, CCAACGG`	PLACE Motif	`GGGCC`
	AtREG429	`ACGGGCCT`		PPDB Motif	`ACGGGC`	PLACE Motif	`GGGCC`
	AtREG351	`GGGCCTTA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG416	`GGCCTTAA`		PPDB Motif		PLACE Motif
REG	`GTCGTTTA`		-	9830556	9830563	-282	-289
	AtREG565	`GTCGTTTA`		PPDB Motif		PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None