PlantPromoterDB promoter information of AT2G23170
Summary of Gene (AT2G23170)
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Overview
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Focused view (chromosome 2: 9867502-9866303)
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Genome position
from initiation codon AT2G23171.1 TSS from cDNA TSS information AT2G23170 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G23170
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 2 | - | 9866552 | -50 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 9866562 | -60 |
| TSS clone | T | clone | - | 9866559 | -57 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CACTATAAATA | - | 9866587 | 9866597 | -85 | -95 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GCTGACGT | - | 9866616 | 9866623 | -114 | -121 | |||
| AtREG515 | GCTGACGT | SA | PPDB Motif | ACGT | PLACE Motif | ACGT | |||
| REG | CGACGTGGAA | - | 9866628 | 9866637 | -126 | -135 | |||
| AtREG465 | CGACGTGG | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | ||||
| AtREG627 | ACGTGGAA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | ||||
| REG | AGCCCACT | - | 9866645 | 9866652 | -143 | -150 | |||
| AtREG510 | AGCCCACT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| REG | GCCCAAAA | - | 9866718 | 9866725 | -216 | -223 | |||
| AtREG529 | GCCCAAAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | ACGTGGCG | - | 9866750 | 9866757 | -248 | -255 | |||
| AtREG371 | ACGTGGCG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
| REG | AACCGCGT | - | 9866827 | 9866834 | -325 | -332 | |||
| AtREG441 | AACCGCGT | Drought | PPDB Motif | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||