Summary of Gene (AT2G23610)
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Overview |
Genome position
from initiation codon AT2G23610.1 TSS from cDNA TSS information AT2G23610 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 4 | - | 10046578 | -175 |
TSS peak | A | 44 | - | 10046440 | -37 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | - | 10046472 | -69 |
TSS clone | A | clone | - | 10046439 | -36 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TCCTATAA | - | 10046600 | 10046607 | -197 | -204 |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GGCGTCGT | - | 10046830 | 10046837 | -427 | -434 | |||
AtREG537 | GGCGTCGT | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 26 | - | 10043654 | AT2G23600.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | - | 10043658 | AT2G23600.1 |
TSS clone | A | clone | - | 10043654 | AT2G23600.1 |
TSS clone | C | clone | - | 10043653 | AT2G23600.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |