PlantPromoterDB promoter information of AT2G23810.1
Summary of Gene (AT2G23810.1)
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Overview
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Focused view (chromosome 2: 10138352-10137153)
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Genome position
from initiation codon TSS from cDNA TSS information AT2G23810.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G23810.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 38 | - | 10137451 | -99 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | - | 10137450 | -98 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TCTCTATATAAACT | - | 10137477 | 10137490 | -125 | -138 |
| Y Patch | TCTTTCTCTC | - | 10137406 | 10137415 | -54 | -63 |
| Y Patch | TCTTCTCT | - | 10137486 | 10137493 | -134 | -141 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TTCACGCGTTT | - | 10137497 | 10137507 | -145 | -155 | |||
| AtREG631 | TTCACGCG | Drought | PPDB Motif | PLACE Motif | |||||
| AtREG633 | ACGCGTTT | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| REG | AAGCGCGTG | - | 10137637 | 10137645 | -285 | -293 | |||
| AtREG492 | AAGCGCGT | PPDB Motif | ACGCGC | PLACE Motif | |||||
| AtREG381 | AGCGCGTG | PPDB Motif | ACGCGC | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||