Summary of Gene (AT2G24230.1)
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Overview |
Genome position
from initiation codon AT2G24250.2 TSS from cDNA TSS information AT2G24230.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | G | clone | - | 10304697 | -157 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | None | None | None |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 5 | - | 10314912 | AT2G24250.1, AT2G24250.2 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | T | clone | - | 10314920 | AT2G24250.1, AT2G24250.2 |
TSS clone | C | clone | - | 10314911 | AT2G24250.1, AT2G24250.2 |
TSS clone | G | clone | - | 10314910 | AT2G24250.1, AT2G24250.2 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | ATAAACCGT | - | 10315009 | 10315017 | AT2G24250.1, AT2G24250.2 | ||||
AtREG598 | ATAAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG652 | TAAACCGT | PPDB Motif |   | PLACE Motif |   | ||||
REG | CTTAACCGG | - | 10315028 | 10315036 | AT2G24250.1, AT2G24250.2 | ||||
AtREG605 | CTTAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif | CNGTTR  | ||||
AtREG501 | TTAACCGG | PPDB Motif | AACCG(G/A)  | PLACE Motif | CNGTTR  | ||||
REG | AAAACGACGTCATC | - | 10315061 | 10315074 | AT2G24250.1, AT2G24250.2 | ||||
AtREG520 | AAAACGAC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG415 | AAACGACG | PPDB Motif |   | PLACE Motif |   | ||||
AtREG493 | AACGACGT | PPDB Motif | ACGT  | PLACE Motif | ACGT  | ||||
AtREG431 | ACGACGTC | PPDB Motif | ACGT  | PLACE Motif | ACGT  | ||||
AtREG578 | ACGTCATC | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT  |