PlantPromoterDB promoter information of AT2G24790.2
Summary of Gene (AT2G24790.2)
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Overview
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Focused view (chromosome 2: 10565959-10567158)
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Genome position
from initiation codon TSS from cDNA TSS information AT2G24790.2 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G24790.2
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 13 | + | 10566898 | -61 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 10566899 | -60 |
| TSS clone | C | clone | + | 10566902 | -57 |
| TSS clone | C | clone | + | 10566903 | -56 |
| TSS clone | A | clone | + | 10566904 | -55 |
| TSS clone | T | clone | + | 10566905 | -54 |
| TSS clone | T | clone | + | 10566908 | -51 |
| TSS clone | T | clone | + | 10566921 | -38 |
| TSS clone | T | clone | + | 10566935 | -24 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCCCTCTCTCT | + | 10566911 | 10566921 | -48 | -38 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ACGTGTCAT | + | 10566785 | 10566793 | -174 | -166 | |||
| AtREG389 | ACGTGTCA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| AtREG438 | CGTGTCAT | ABA | PPDB Motif | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||