Summary of Gene (AT2G25610.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT2G25610.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 8 | - | 10902533 | -39 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 10902549 | -55 |
TSS clone | A | clone | - | 10902531 | -37 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTCCTCCTCC | - | 10902551 | 10902561 | -57 | -67 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AGCGCGTGA | - | 10902605 | 10902613 | -111 | -119 | |||
AtREG381 | AGCGCGTG | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
AtREG395 | GCGCGTGA | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
REG | TTCACGCGC | - | 10902621 | 10902629 | -127 | -135 | |||
AtREG631 | TTCACGCG | Drought | PPDB Motif |   | PLACE Motif |   | |||
AtREG395 | TCACGCGC | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
REG | AGGCCTATA | - | 10902644 | 10902652 | -150 | -158 | |||
AtREG649 | AGGCCTAT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG487 | GGCCTATA | PPDB Motif |   | PLACE Motif |   | ||||
REG | AGTGGGCTATT | - | 10902666 | 10902676 | -172 | -182 | |||
AtREG510 | AGTGGGCT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG584 | GGGCTATT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CAAGGCCCAATAG | - | 10902686 | 10902698 | -192 | -204 | |||
AtREG398 | CAAGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG353 | AAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG356 | AGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG352 | GGCCCAAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG355 | GCCCAATA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG624 | CCCAATAG | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |