Summary of Gene (AT2G25690.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT2G25690.1 5'->3' (-) Promoter sequence AT2G25687.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 4 | - | 10942275 | -626 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 10941961 | -312 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TTCTCCTCTTTC | - | 10942276 | 10942287 | -627 | -638 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TCACGCGCTT | - | 10942368 | 10942377 | -719 | -728 | |||
AtREG395 | TCACGCGC | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
AtREG381 | CACGCGCT | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
AtREG492 | ACGCGCTT | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
REG | AAAAAGCC | - | 10942402 | 10942409 | -753 | -760 | |||
AtREG589 | AAAAAGCC | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CCATATATAAC | - | 10938153 | 10938163 | AT2G25685.1 | |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |