Summary of Gene (AT2G25830.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT2G25830.1 5'->3' (-) Promoter sequence AT2G25840.1
AT2G25840.2 AT2G25840.3 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | - | 11021698 | -33 |
TSS clone peak | A | clone | - | 11021690 | -25 |
TSS clone | T | clone | - | 11021689 | -24 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | None | None | None |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 8 | + | 11021901 | AT2G25840.1, AT2G25840.3, AT2G25840.2 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | G | clone | + | 11021905 | AT2G25840.1, AT2G25840.3, AT2G25840.2 |
TSS clone | A | clone | + | 11021906 | AT2G25840.1, AT2G25840.3, AT2G25840.2 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CTTATAAACC | + | 11021868 | 11021877 | AT2G25840.1, AT2G25840.2, AT2G25840.3 | |
Y Patch | TCTTCTTCTTC | + | 11021882 | 11021892 | AT2G25840.1, AT2G25840.2, AT2G25840.3 | |
Y Patch | TCTCTCTC | + | 11021941 | 11021948 | AT2G25840.1, AT2G25840.2, AT2G25840.3 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | CCGCGTGA | + | 11021827 | 11021834 | AT2G25840.1, AT2G25840.2, AT2G25840.3 | ||||
AtREG502 | CCGCGTGA | Drought | PPDB Motif |   | PLACE Motif |   |