Summary of Gene (AT2G25840.2)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT2G25840.2 5'->3' (+) Promoter sequence AT2G25880.1
AT2G25880.2 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 8 | + | 11021901 | -23 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | + | 11021905 | -19 |
TSS clone | A | clone | + | 11021906 | -18 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CTTATAAACC | + | 11021868 | 11021877 | -56 | -47 |
Y Patch | TCTTCTTCTTC | + | 11021882 | 11021892 | -42 | -32 |
Y Patch | TCTCTCTC | + | 11021941 | 11021948 | 17 | 24 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCGCGTGA | + | 11021827 | 11021834 | -97 | -90 | |||
AtREG502 | CCGCGTGA | Drought | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | ACAGGCCCAGA | + | 11037060 | 11037070 | AT2G25890.1 | ||||
AtREG433 | ACAGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG370 | CAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG410 | AGGCCCAG | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG397 | GGCCCAGA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
REG | TAAGCCCAC | + | 11037077 | 11037085 | AT2G25890.1 | ||||
AtREG426 | TAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG518 | AAGCCCAC | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  |