Summary of Gene (AT2G25840.2)
|
Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT2G25840.2 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 8 | + | 11021901 | -23 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | + | 11021905 | -19 |
TSS clone | A | clone | + | 11021906 | -18 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CTTATAAACC | + | 11021868 | 11021877 | -56 | -47 |
Y Patch | TCTTCTTCTTC | + | 11021882 | 11021892 | -42 | -32 |
Y Patch | TCTCTCTC | + | 11021941 | 11021948 | 17 | 24 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCGCGTGA | + | 11021827 | 11021834 | -97 | -90 | |||
AtREG502 | CCGCGTGA | Drought | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 4 | + | 11037352 | AT2G25890.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | C | clone | + | 11037410 | AT2G25890.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CCTCTCCTTC | + | 11037314 | 11037323 | AT2G25890.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | CAAGCCCA | + | 11037129 | 11037136 | AT2G25890.1 | ||||
AtREG525 | CAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
REG | AATAGCCCAATAAG | + | 11037140 | 11037153 | AT2G25890.1 | ||||
AtREG584 | AATAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG402 | AGCCCAAT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG355 | GCCCAATA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG417 | CCCAATAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG611 | CCAATAAG | PPDB Motif |   | PLACE Motif |   | ||||
REG | ACCACGTGTCA | + | 11037198 | 11037208 | AT2G25890.1 | ||||
AtREG544 | ACCACGTG | ABA, DREB1Aox | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | |||
AtREG382 | CCACGTGT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG  | |||
AtREG366 | CACGTGTC | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC  | |||
AtREG389 | ACGTGTCA | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC  | |||
REG | CCGCGTGA | + | 11037247 | 11037254 | AT2G25890.1 | ||||
AtREG502 | CCGCGTGA | Drought | PPDB Motif |   | PLACE Motif |   | |||
REG | TCGTCGTT | + | 11037281 | 11037288 | AT2G25890.1 | ||||
AtREG648 | TCGTCGTT | PPDB Motif |   | PLACE Motif |   |