Summary of Gene (AT2G25840.3)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT2G25840.3 5'->3' (+) Promoter sequence AT2G25850.1
AT2G25850.2 AT2G25850.3 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 8 | + | 11021901 | -23 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | + | 11021905 | -19 |
TSS clone | A | clone | + | 11021906 | -18 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CTTATAAACC | + | 11021868 | 11021877 | -56 | -47 |
Y Patch | TCTTCTTCTTC | + | 11021882 | 11021892 | -42 | -32 |
Y Patch | TCTCTCTC | + | 11021941 | 11021948 | 17 | 24 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCGCGTGA | + | 11021827 | 11021834 | -97 | -90 | |||
AtREG502 | CCGCGTGA | Drought | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 10 | + | 11031121 | AT2G25870.1 |
TSS peak | G | 2 | - | 11030757 | AT2G25850.2, AT2G25850.1, AT2G25850.3 |
TSS peak | G | 2 | - | 11030684 | AT2G25850.2, AT2G25850.1, AT2G25850.3 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | T | clone | + | 11031094 | AT2G25870.1 |
TSS clone | A | clone | + | 11031115 | AT2G25870.1 |
TSS clone | T | clone | + | 11031120 | AT2G25870.1 |
TSS clone | G | clone | - | 11030627 | AT2G25850.2, AT2G25850.1, AT2G25850.3 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CCTCCTTCTCTC | + | 11031130 | 11031141 | AT2G25870.1 | |
Y Patch | CTTCTCCTTCTCTCCC | - | 11030764 | 11030779 | AT2G25850.1, AT2G25850.2, AT2G25850.3 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | AACCCGGT | + | 11030865 | 11030872 | AT2G25870.1 | ||||
AtREG516 | AACCCGGT | PPDB Motif |   | PLACE Motif |   | ||||
REG | TTTCCGGTTCG | + | 11030910 | 11030920 | AT2G25870.1 | ||||
AtREG644 | TTTCCGGT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG534 | TTCCGGTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG579 | TCCGGTTC | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG423 | CCGGTTCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | ATCCGGTTTAA | + | 11030928 | 11030938 | AT2G25870.1 | ||||
AtREG561 | ATCCGGTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG521 | TCCGGTTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG412 | CCGGTTTA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG473 | CGGTTTAA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | ATCCGGTTTAT | + | 11031028 | 11031038 | AT2G25870.1 | ||||
AtREG561 | ATCCGGTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG521 | TCCGGTTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG412 | CCGGTTTA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG598 | CGGTTTAT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | TTCGGTTTAG | + | 11031052 | 11031061 | AT2G25870.1 | ||||
AtREG568 | TTCGGTTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG514 | TCGGTTTA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG511 | CGGTTTAG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | ACCGGGTT | - | 11030865 | 11030872 | AT2G25850.1, AT2G25850.2, AT2G25850.3 | ||||
AtREG516 | ACCGGGTT | PPDB Motif |   | PLACE Motif |   | ||||
REG | CGAACCGGAAA | - | 11030910 | 11030920 | AT2G25850.1, AT2G25850.2, AT2G25850.3 | ||||
AtREG423 | CGAACCGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG579 | GAACCGGA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG534 | AACCGGAA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG644 | ACCGGAAA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | TTAAACCGGAT | - | 11030928 | 11030938 | AT2G25850.1, AT2G25850.2, AT2G25850.3 | ||||
AtREG473 | TTAAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG412 | TAAACCGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG521 | AAACCGGA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG561 | AACCGGAT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | ATAAACCGGAT | - | 11031028 | 11031038 | AT2G25850.1, AT2G25850.2, AT2G25850.3 | ||||
AtREG598 | ATAAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG412 | TAAACCGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG521 | AAACCGGA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG561 | AACCGGAT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |