Summary of Gene (AT2G26330)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT2G26330 5'->3' (-) Promoter sequence AT2G26340.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 8 | - | 11213960 | -65 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | - | 11213971 | -76 |
TSS clone | T | clone | - | 11213970 | -75 |
TSS clone | A | clone | - | 11213949 | -54 |
TSS clone | T | clone | - | 11213905 | -10 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TTTCTTCTTC | - | 11213961 | 11213970 | -66 | -75 |
Y Patch | TTCTCTTCTTCTTCTCT | - | 11213979 | 11213995 | -84 | -100 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CGGTTAAA | - | 11214074 | 11214081 | -179 | -186 | |||
AtREG645 | CGGTTAAA | PPDB Motif | AACCG(G/A)  | PLACE Motif | CNGTTR  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |