PlantPromoterDB promoter information of AT2G26692.1
Summary of Gene (AT2G26692.1)
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Overview
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Focused view (chromosome 2: 11351984-11350785)
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Genome position
TSS from cDNA TSS information AT2G26692.1 5'->3' (-) Promoter sequence AT2G26692
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G26692.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | G | 2 | - | 11351124 | AT2G26690.1 |
| TSS peak | G | 17 | - | 11350987 | AT2G26690.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | G | clone | - | 11350993 | AT2G26690.1 |
| TSS clone | C | clone | - | 11350992 | AT2G26690.1 |
| TSS clone | G | clone | - | 11350987 | AT2G26690.1 |
| TSS clone | G | clone | - | 11350984 | AT2G26690.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | GGCTATAAAAA | - | 11351019 | 11351029 | AT2G26690.1 | |
| TATA Box | AATATAAATT | - | 11351155 | 11351164 | AT2G26690.1 | |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | TGGGACCCA | - | 11351273 | 11351281 | AT2G26690.1 | ||||
| AtREG596 | TGGGACCC | PPDB Motif | GGGACCC | PLACE Motif | |||||
| AtREG615 | GGGACCCA | ABA | PPDB Motif | GGGACCC | PLACE Motif | ||||