PlantPromoterDB promoter information of AT2G27530.1
Summary of Gene (AT2G27530.1)
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Overview
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Focused view (chromosome 2: 11765570-11764371)
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Genome position
from initiation codon AT2G27535.1 TSS from cDNA TSS information AT2G27530.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G27530.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 111 | - | 11764794 | -224 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | - | 11764829 | -259 |
| TSS clone | A | clone | - | 11764828 | -258 |
| TSS clone | G | clone | - | 11764814 | -244 |
| TSS clone | C | clone | - | 11764807 | -237 |
| TSS clone | T | clone | - | 11764806 | -236 |
| TSS clone | A | clone | - | 11764798 | -228 |
| TSS clone | A | clone | - | 11764797 | -227 |
| TSS clone | C | clone | - | 11764796 | -226 |
| TSS clone | A | clone | - | 11764794 | -224 |
| TSS clone | G | clone | - | 11764793 | -223 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | GATATAAAAT | - | 11764820 | 11764829 | -250 | -259 |
| Y Patch | TCTCTCTCC | - | 11764754 | 11764762 | -184 | -192 |
| Y Patch | CTTTCTTC | - | 11764777 | 11764784 | -207 | -214 |
| Y Patch | TTTCTTCTTCCT | - | 11764831 | 11764842 | -261 | -272 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AAAAGCCCAT | - | 11764888 | 11764897 | -318 | -327 | |||
| AtREG409 | AAAAGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG376 | AAAGCCCA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG378 | AAGCCCAT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| REG | GCCCACTA | - | 11764905 | 11764912 | -335 | -342 | |||
| AtREG532 | GCCCACTA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | AGATGGGCTTTTT | - | 11764931 | 11764943 | -361 | -373 | |||
| AtREG572 | AGATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG378 | ATGGGCTT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG376 | TGGGCTTT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG409 | GGGCTTTT | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG589 | GGCTTTTT | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||