PlantPromoterDB promoter information of AT2G28000.1
Summary of Gene (AT2G28000.1)
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Overview
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Focused view (chromosome 2: 11925603-11926802)
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Genome position
from initiation codon TSS from cDNA TSS information AT2G28000.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G28000.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 42 | + | 11926523 | -80 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | + | 11926519 | -84 |
| TSS clone | C | clone | + | 11926520 | -83 |
| TSS clone | A | clone | + | 11926521 | -82 |
| TSS clone | C | clone | + | 11926524 | -79 |
| TSS clone | T | clone | + | 11926525 | -78 |
| TSS clone | T | clone | + | 11926527 | -76 |
| TSS clone | G | clone | + | 11926530 | -73 |
| TSS clone | T | clone | + | 11926531 | -72 |
| TSS clone | T | clone | + | 11926532 | -71 |
| TSS clone | A | clone | + | 11926565 | -38 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTCTCTCC | + | 11926482 | 11926489 | -121 | -114 |
| Y Patch | CCTCCTCC | + | 11926512 | 11926519 | -91 | -84 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TTATTGGGCCATA | + | 11926360 | 11926372 | -243 | -231 | |||
| AtREG417 | TTATTGGG | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG355 | TATTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG352 | ATTGGGCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG420 | TTGGGCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG437 | TGGGCCAT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG479 | GGGCCATA | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| REG | ACAGGCCCATA | + | 11926386 | 11926396 | -217 | -207 | |||
| AtREG433 | ACAGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG370 | CAGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG354 | AGGCCCAT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG364 | GGCCCATA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||