PlantPromoterDB promoter information of AT2G28840
Summary of Gene (AT2G28840)
|
Overview
|
Focused view (chromosome 2: 12377792-12378991)
|
Genome position
from initiation codon AT2G28840.2 TSS from cDNA TSS information AT2G28840 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT2G28840
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 123 | + | 12378381 | -161 |
| TSS peak | C | 2 | + | 12378607 | 65 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 12378337 | -205 |
| TSS clone | A | clone | + | 12378344 | -198 |
| TSS clone | T | clone | + | 12378353 | -189 |
| TSS clone | T | clone | + | 12378373 | -169 |
| TSS clone | T | clone | + | 12378375 | -167 |
| TSS clone | A | clone | + | 12378381 | -161 |
| TSS clone | T | clone | + | 12378382 | -160 |
| TSS clone | G | clone | + | 12378384 | -158 |
| TSS clone | T | clone | + | 12378385 | -157 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTTCTTCCCTCTTCTTCTTCTCC | + | 12378357 | 12378380 | -185 | -162 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGTGTCGTT | + | 12378465 | 12378473 | -77 | -69 | |||
| AtREG599 | GGTGTCGT | PPDB Motif | PLACE Motif | ||||||
| AtREG527 | GTGTCGTT | DREB1Aox | PPDB Motif | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||