Summary of Gene (AT2G28840)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT2G28840 5'->3' (+) Promoter sequence AT2G28850.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 123 | + | 12378381 | -161 |
TSS peak | C | 2 | + | 12378607 | 65 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | + | 12378337 | -205 |
TSS clone | A | clone | + | 12378344 | -198 |
TSS clone | T | clone | + | 12378353 | -189 |
TSS clone | T | clone | + | 12378373 | -169 |
TSS clone | T | clone | + | 12378375 | -167 |
TSS clone | A | clone | + | 12378381 | -161 |
TSS clone | T | clone | + | 12378382 | -160 |
TSS clone | G | clone | + | 12378384 | -158 |
TSS clone | T | clone | + | 12378385 | -157 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTTCTTCCCTCTTCTTCTTCTCC | + | 12378357 | 12378380 | -185 | -162 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GGTGTCGTT | + | 12378465 | 12378473 | -77 | -69 | |||
AtREG599 | GGTGTCGT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG527 | GTGTCGTT | DREB1Aox | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |