Summary of Gene (AT2G29560.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT2G29560.1 5'->3' (+) Promoter sequence AT2G29550.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 2 | + | 12646560 | -75 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | + | 12646589 | -46 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CGCACGTG | + | 12646284 | 12646291 | -351 | -344 | |||
AtREG541 | CGCACGTG | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG  | ||||
REG | CGCACGTG | + | 12646330 | 12646337 | -305 | -298 | |||
AtREG541 | CGCACGTG | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG  | ||||
REG | CTTATTGGGCCTAAAATGGGCTTTTA | + | 12646346 | 12646371 | -289 | -264 | |||
AtREG611 | CTTATTGG | PPDB Motif |   | PLACE Motif |   | ||||
AtREG417 | TTATTGGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG355 | TATTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG352 | ATTGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG356 | TTGGGCCT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG358 | TGGGCCTA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG360 | GGGCCTAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG430 | GGCCTAAA | PPDB Motif |   | PLACE Motif |   | ||||
AtREG386 | AAATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG372 | AATGGGCT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG378 | ATGGGCTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG376 | TGGGCTTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG409 | GGGCTTTT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG549 | GGCTTTTA | PPDB Motif |   | PLACE Motif |   | ||||
REG | CTTATTGG | + | 12646487 | 12646494 | -148 | -141 | |||
AtREG611 | CTTATTGG | PPDB Motif |   | PLACE Motif |   | ||||
REG | TGAACCGGA | + | 12646499 | 12646507 | -136 | -128 | |||
AtREG480 | TGAACCGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG579 | GAACCGGA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | TGAACCGGA | + | 12646511 | 12646519 | -124 | -116 | |||
AtREG480 | TGAACCGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG579 | GAACCGGA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 4 | - | 12646035 | AT2G29550.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | T | clone | - | 12646067 | AT2G29550.1 |
TSS clone | C | clone | - | 12646038 | AT2G29550.1 |
TSS clone | A | clone | - | 12646037 | AT2G29550.1 |
TSS clone | T | clone | - | 12646036 | AT2G29550.1 |
TSS clone | A | clone | - | 12646035 | AT2G29550.1 |
TSS clone | C | clone | - | 12646003 | AT2G29550.1 |
TSS clone | A | clone | - | 12645963 | AT2G29550.1 |
TSS clone | A | clone | - | 12645939 | AT2G29550.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TCTTTATAAATG | - | 12646062 | 12646073 | AT2G29550.1 | |
Y Patch | CTTCTCCTTTC | - | 12646005 | 12646015 | AT2G29550.1 | |
Y Patch | TCCTCTCT | - | 12646017 | 12646024 | AT2G29550.1 | |
Y Patch | CCTCCTCTTCTTCTCTCTCTCAT | - | 12646036 | 12646058 | AT2G29550.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | CCGTTAAA | - | 12646083 | 12646090 | AT2G29550.1 | ||||
AtREG610 | CCGTTAAA | PPDB Motif |   | PLACE Motif | YAACKG, CNGTTR  | ||||
REG | CTAAACCGT | - | 12646120 | 12646128 | AT2G29550.1 | ||||
AtREG511 | CTAAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG652 | TAAACCGT | PPDB Motif |   | PLACE Motif |   | ||||
REG | TACGTGGCAT | - | 12646132 | 12646141 | AT2G29550.1 | ||||
AtREG413 | TACGTGGC | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | ||||
AtREG379 | ACGTGGCA | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | |||
AtREG448 | CGTGGCAT | ABA, DREB1Aox | PPDB Motif |   | PLACE Motif | GCCAC  | |||
REG | CTTAATGG | - | 12646247 | 12646254 | AT2G29550.1 | ||||
AtREG604 | CTTAATGG | PPDB Motif |   | PLACE Motif | TTAATGG  | ||||
REG | CACGTGCG | - | 12646284 | 12646291 | AT2G29550.1 | ||||
AtREG541 | CACGTGCG | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG  |