PlantPromoterDB promoter information of AT2G29560.1

Summary of Gene (AT2G29560.1)

Organism	Arabidopsis thaliana
Chromosome	2
Locus	AT2G29560 TAIR NCBI
Gene model	AT2G29560.1
Description	enolase, putative; FUNCTIONS IN: phosphopyruvate hydratase activity; INVOLVED IN: glycolysis; LOCATED IN: phosphopyruvate hydratase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Enolase (InterPro:IPR000941); BEST Arabidopsis thaliana protein match is: LOS2; copper ion binding / phosphopyruvate hydratase (TAIR:AT2G36530.1); Has 9375 Blast hits to 9353 proteins in 2216 species: Archae - 179; Bacteria - 3114; Metazoa - 1311; Fungi - 220; Plants - 152; Viruses - 0; Other Eukaryotes - 4399 (source: NCBI BLink).

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Overview

Focused view (chromosome 2: 12645635-12646834)

`Genome position from initiation codon` `TSS from cDNA TSS information AT2G29560.1 5'->3' (+) Promoter sequence AT2G29550.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT2G29560.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 2 + 12646560 -75

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	2	+	12646560	-75

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone T clone + 12646589 -46

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`T`	clone	+	12646589	-46

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG CGCACGTG + 12646284 12646291 -351 -344

AtREG541 CGCACGTG PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG

REG CGCACGTG + 12646330 12646337 -305 -298

AtREG541 CGCACGTG PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG

REG CTTATTGGGCCTAAAATGGGCTTTTA + 12646346 12646371 -289 -264

AtREG611 CTTATTGG                   PPDB Motif PLACE Motif

AtREG417 TTATTGGG                  PPDB Motif GCCCA PLACE Motif

AtREG355   TATTGGGC                 PPDB Motif GCCCA PLACE Motif

AtREG352    ATTGGGCC                PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356     TTGGGCCT               PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG358      TGGGCCTA              PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG360       GGGCCTAA             PPDB Motif GCCCA PLACE Motif GGGCC

AtREG430        GGCCTAAA            PPDB Motif PLACE Motif

AtREG386              AAATGGGC      PPDB Motif GCCCA PLACE Motif

AtREG372               AATGGGCT     PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378                ATGGGCTT    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG376                 TGGGCTTT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG409                  GGGCTTTT PPDB Motif GCCCA PLACE Motif

AtREG549                   GGCTTTTA PPDB Motif PLACE Motif

REG CTTATTGG + 12646487 12646494 -148 -141

AtREG611 CTTATTGG PPDB Motif PLACE Motif

REG TGAACCGGA + 12646499 12646507 -136 -128

AtREG480 TGAACCGG PPDB Motif AACCG(G/A) PLACE Motif

AtREG579 GAACCGGA PPDB Motif AACCG(G/A) PLACE Motif

REG TGAACCGGA + 12646511 12646519 -124 -116

AtREG480 TGAACCGG PPDB Motif AACCG(G/A) PLACE Motif

AtREG579 GAACCGGA PPDB Motif AACCG(G/A) PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`CGCACGTG`		+	12646284	12646291	-351	-344
	AtREG541	`CGCACGTG`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG`
REG	`CGCACGTG`		+	12646330	12646337	-305	-298
	AtREG541	`CGCACGTG`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG`
REG	`CTTATTGGGCCTAAAATGGGCTTTTA`		+	12646346	12646371	-289	-264
	AtREG611	`CTTATTGG`		PPDB Motif		PLACE Motif
	AtREG417	`TTATTGGG`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG355	`TATTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG352	`ATTGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG356	`TTGGGCCT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG358	`TGGGCCTA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG360	`GGGCCTAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG430	`GGCCTAAA`		PPDB Motif		PLACE Motif
	AtREG386	`AAATGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG372	`AATGGGCT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG378	`ATGGGCTT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG376	`TGGGCTTT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG409	`GGGCTTTT`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG549	`GGCTTTTA`		PPDB Motif		PLACE Motif
REG	`CTTATTGG`		+	12646487	12646494	-148	-141
	AtREG611	`CTTATTGG`		PPDB Motif		PLACE Motif
REG	`TGAACCGGA`		+	12646499	12646507	-136	-128
	AtREG480	`TGAACCGG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG579	`GAACCGGA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`TGAACCGGA`		+	12646511	12646519	-124	-116
	AtREG480	`TGAACCGG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG579	`GAACCGGA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 4 - 12646035 AT2G29550.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	4	-	12646035	AT2G29550.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone T clone - 12646067 AT2G29550.1

TSS clone C clone - 12646038 AT2G29550.1

TSS clone A clone - 12646037 AT2G29550.1

TSS clone T clone - 12646036 AT2G29550.1

TSS clone A clone - 12646035 AT2G29550.1

TSS clone C clone - 12646003 AT2G29550.1

TSS clone A clone - 12645963 AT2G29550.1

TSS clone A clone - 12645939 AT2G29550.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`T`	clone	-	12646067	AT2G29550.1
TSS clone	`C`	clone	-	12646038	AT2G29550.1
TSS clone	`A`	clone	-	12646037	AT2G29550.1
TSS clone	`T`	clone	-	12646036	AT2G29550.1
TSS clone	`A`	clone	-	12646035	AT2G29550.1
TSS clone	`C`	clone	-	12646003	AT2G29550.1
TSS clone	`A`	clone	-	12645963	AT2G29550.1
TSS clone	`A`	clone	-	12645939	AT2G29550.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box TCTTTATAAATG - 12646062 12646073 AT2G29550.1

Y Patch CTTCTCCTTTC - 12646005 12646015 AT2G29550.1

Y Patch TCCTCTCT - 12646017 12646024 AT2G29550.1

Y Patch CCTCCTCTTCTTCTCTCTCTCAT - 12646036 12646058 AT2G29550.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`TCTTTATAAATG`	-	12646062	12646073	AT2G29550.1
Y Patch	`CTTCTCCTTTC`	-	12646005	12646015	AT2G29550.1
Y Patch	`TCCTCTCT`	-	12646017	12646024	AT2G29550.1
Y Patch	`CCTCCTCTTCTTCTCTCTCTCAT`	-	12646036	12646058	AT2G29550.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG CCGTTAAA - 12646083 12646090 AT2G29550.1

AtREG610 CCGTTAAA PPDB Motif PLACE Motif YAACKG, CNGTTR

REG CTAAACCGT - 12646120 12646128 AT2G29550.1

AtREG511 CTAAACCG PPDB Motif AACCG(G/A) PLACE Motif

AtREG652 TAAACCGT PPDB Motif PLACE Motif

REG TACGTGGCAT - 12646132 12646141 AT2G29550.1

AtREG413 TACGTGGC PPDB Motif ACGT PLACE Motif ACGT, ACGTG, GCCAC, ACGTGKC

AtREG379 ACGTGGCA ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, GCCAC, ACGTGKC

AtREG448 CGTGGCAT ABA, DREB1Aox PPDB Motif PLACE Motif GCCAC

REG CTTAATGG - 12646247 12646254 AT2G29550.1

AtREG604 CTTAATGG PPDB Motif PLACE Motif TTAATGG

REG CACGTGCG - 12646284 12646291 AT2G29550.1

AtREG541 CACGTGCG PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG