PlantPromoterDB promoter information of AT2G29570
Summary of Gene (AT2G29570)
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Overview
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Focused view (chromosome 2: 12652598-12651399)
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Genome position
from initiation codon TSS from cDNA TSS information AT2G29570 5'->3' (-) Promoter sequence AT2G29580.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G29570
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | T | clone | - | 12651674 | -76 |
| TSS clone peak | G | clone | - | 12651669 | -71 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | G | 8 | + | 12651923 | AT2G29580.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | G | clone | + | 12651923 | AT2G29580.1 |
| TSS clone | A | clone | + | 12651961 | AT2G29580.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | AGGGTATTT | + | 12651743 | 12651751 | AT2G29580.1 | ||||
| AtREG567 | AGGGTATT | PPDB Motif | ACCCT | PLACE Motif | |||||
| AtREG602 | GGGTATTT | PPDB Motif | PLACE Motif | ||||||
| REG | AATTGGGCCAA | + | 12651855 | 12651865 | AT2G29580.1 | ||||
| AtREG418 | AATTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG352 | ATTGGGCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG420 | TTGGGCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG484 | TGGGCCAA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| REG | TTCGGCCCAA | + | 12651873 | 12651882 | AT2G29580.1 | ||||
| AtREG427 | TTCGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG393 | TCGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG414 | CGGCCCAA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||