PlantPromoterDB promoter information of AT2G29700.1
Summary of Gene (AT2G29700.1)
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Overview
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Focused view (chromosome 2: 12696571-12697770)
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Genome position
from initiation codon TSS from cDNA TSS information AT2G29700.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G29700.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 2 | + | 12697417 | -154 |
| TSS peak | A | 18 | + | 12697522 | -49 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | + | 12697509 | -62 |
| TSS clone | A | clone | + | 12697522 | -49 |
| TSS clone | G | clone | + | 12697523 | -48 |
| TSS clone | G | clone | + | 12697527 | -44 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TTGACTTT | + | 12697154 | 12697161 | -417 | -410 | |||
| AtREG632 | TTGACTTT | PPDB Motif | PLACE Motif | TTGAC | |||||
| REG | CTAAACCGT | + | 12697207 | 12697215 | -364 | -356 | |||
| AtREG511 | CTAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG652 | TAAACCGT | PPDB Motif | PLACE Motif | ||||||
| REG | CTAAACCGGTTTAA | + | 12697311 | 12697324 | -260 | -247 | |||
| AtREG511 | CTAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG436 | AAACCGGTTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG412 | TAAACCGGTTTA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG473 | CGGTTTAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | TCGGTTTAA | + | 12697330 | 12697338 | -241 | -233 | |||
| AtREG514 | TCGGTTTA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG473 | CGGTTTAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | TAAAACGC | + | 12697377 | 12697384 | -194 | -187 | |||
| AtREG564 | TAAAACGC | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| REG | CAAAACGC | + | 12697428 | 12697435 | -143 | -136 | |||
| AtREG585 | CAAAACGC | PPDB Motif | AAACG(C/G) | PLACE Motif | CAAAACGC | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||