PlantPromoterDB promoter information of AT2G30250
Summary of Gene (AT2G30250)
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Overview
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Focused view (chromosome 2: 12906089-12904890)
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Genome position
from initiation codon AT2G30260.1 TSS from cDNA TSS information AT2G30250 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G30250
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 2 | - | 12905169 | -80 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 12905198 | -109 |
| TSS clone | A | clone | - | 12905168 | -79 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TAAAAGCC | - | 12905212 | 12905219 | -123 | -130 | |||
| AtREG549 | TAAAAGCC | PPDB Motif | PLACE Motif | ||||||
| REG | TTTAGGCC | - | 12905299 | 12905306 | -210 | -217 | |||
| AtREG430 | TTTAGGCC | PPDB Motif | PLACE Motif | ||||||
| REG | ACGCGGTT | - | 12905406 | 12905413 | -317 | -324 | |||
| AtREG441 | ACGCGGTT | Drought | PPDB Motif | PLACE Motif | |||||
| REG | ATCCGGTTTT | - | 12905442 | 12905451 | -353 | -362 | |||
| AtREG561 | ATCCGGTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG521 | TCCGGTTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG542 | CCGGTTTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||