PlantPromoterDB promoter information of AT2G30520
Summary of Gene (AT2G30520)
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Overview
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Focused view (chromosome 2: 13006573-13005374)
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Genome position
from initiation codon AT2G30520.2 AT2G30520.3 TSS from cDNA TSS information AT2G30520 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G30520
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 30 | - | 13005591 | -18 |
| TSS peak | A | 4 | - | 13005158 | 415 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 13005599 | -26 |
| TSS clone | C | clone | - | 13005595 | -22 |
| TSS clone | T | clone | - | 13005594 | -21 |
| TSS clone | A | clone | - | 13005590 | -17 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | AATATATAGA | - | 13005621 | 13005630 | -48 | -57 |
| Y Patch | TCTCCTTC | - | 13005592 | 13005599 | -19 | -26 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGGACCCA | - | 13005646 | 13005653 | -73 | -80 | |||
| AtREG615 | GGGACCCA | ABA | PPDB Motif | GGGACCC | PLACE Motif | ||||
| REG | CAATTGGG | - | 13005663 | 13005670 | -90 | -97 | |||
| AtREG647 | CAATTGGG | PPDB Motif | PLACE Motif | ||||||
| REG | AAAACGACA | - | 13005728 | 13005736 | -155 | -163 | |||
| AtREG520 | AAAACGAC | PPDB Motif | PLACE Motif | ||||||
| AtREG569 | AAACGACA | PPDB Motif | PLACE Motif | ||||||
| REG | TAAACGACGA | - | 13005791 | 13005800 | -218 | -227 | |||
| AtREG565 | TAAACGAC | PPDB Motif | PLACE Motif | ||||||
| AtREG415 | AAACGACG | PPDB Motif | PLACE Motif | ||||||
| AtREG648 | AACGACGA | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||