PlantPromoterDB promoter information of AT2G30570
Summary of Gene (AT2G30570)
|
Overview
|
Focused view (chromosome 2: 13021053-13019854)
|
Genome position
from initiation codon AT2G30575.1 TSS from cDNA TSS information AT2G30570 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT2G30570
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 60 | - | 13020112 | -59 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 13020161 | -108 |
| TSS clone | C | clone | - | 13020157 | -104 |
| TSS clone | C | clone | - | 13020153 | -100 |
| TSS clone | A | clone | - | 13020152 | -99 |
| TSS clone | A | clone | - | 13020151 | -98 |
| TSS clone | A | clone | - | 13020147 | -94 |
| TSS clone | A | clone | - | 13020146 | -93 |
| TSS clone | A | clone | - | 13020143 | -90 |
| TSS clone | A | clone | - | 13020142 | -89 |
| TSS clone | A | clone | - | 13020141 | -88 |
| TSS clone | G | clone | - | 13020137 | -84 |
| TSS clone | T | clone | - | 13020136 | -83 |
| TSS clone | C | clone | - | 13020127 | -74 |
| TSS clone | T | clone | - | 13020124 | -71 |
| TSS clone | A | clone | - | 13020115 | -62 |
| TSS clone | A | clone | - | 13020112 | -59 |
| TSS clone | G | clone | - | 13020111 | -58 |
| TSS clone | A | clone | - | 13020110 | -57 |
| TSS clone | T | clone | - | 13020097 | -44 |
| TSS clone | C | clone | - | 13020084 | -31 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ATGACACGTGGA | - | 13020269 | 13020280 | -216 | -227 | |||
| AtREG438 | ATGACACG | ABA | PPDB Motif | PLACE Motif | |||||
| AtREG389 | TGACACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| AtREG366 | GACACGTG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC | |||
| AtREG382 | ACACGTGG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| AtREG408 | CACGTGGA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||