PlantPromoterDB promoter information of AT2G30860
Summary of Gene (AT2G30860)
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Overview
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Focused view (chromosome 2: 13138132-13139331)
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Genome position
from initiation codon AT2G30860.2 TSS from cDNA TSS information AT2G30860 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G30860
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 4 | + | 13138939 | -193 |
| TSS peak | A | 243 | + | 13139081 | -51 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | + | 13139078 | -54 |
| TSS clone | T | clone | + | 13139079 | -53 |
| TSS clone | A | clone | + | 13139081 | -51 |
| TSS clone | C | clone | + | 13139082 | -50 |
| TSS clone | C | clone | + | 13139084 | -48 |
| TSS clone | A | clone | + | 13139086 | -46 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TCTCTATAAAAC | + | 13139042 | 13139053 | -90 | -79 |
| Y Patch | TCTTTCTCT | + | 13139038 | 13139046 | -94 | -86 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ACGCCACGT | + | 13138990 | 13138998 | -142 | -134 | |||
| AtREG508 | ACGCCACG | PPDB Motif | PLACE Motif | GCCAC | |||||
| AtREG371 | CGCCACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
| REG | CCGCCACG | + | 13139000 | 13139007 | -132 | -125 | |||
| AtREG560 | CCGCCACG | ABA | PPDB Motif | CCGAC | PLACE Motif | GCCAC | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||