PlantPromoterDB promoter information of AT2G30870
Summary of Gene (AT2G30870)
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Overview
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Focused view (chromosome 2: 13140490-13141689)
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Genome position
from initiation codon TSS from cDNA TSS information AT2G30870 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G30870
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 183 | + | 13141450 | -40 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | + | 13141357 | -133 |
| TSS clone | T | clone | + | 13141358 | -132 |
| TSS clone | A | clone | + | 13141450 | -40 |
| TSS clone | G | clone | + | 13141451 | -39 |
| TSS clone | A | clone | + | 13141452 | -38 |
| TSS clone | G | clone | + | 13141455 | -35 |
| TSS clone | A | clone | + | 13141462 | -28 |
| TSS clone | G | clone | + | 13141468 | -22 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CCTCTATAAAAT | + | 13141416 | 13141427 | -74 | -63 |
| Y Patch | TCTCTCTTT | + | 13141401 | 13141409 | -89 | -81 |
| Y Patch | TTCCCTCT | + | 13141413 | 13141420 | -77 | -70 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AAAGTCAA | + | 13141264 | 13141271 | -226 | -219 | |||
| AtREG632 | AAAGTCAA | PPDB Motif | PLACE Motif | TTGAC | |||||
| REG | ATGACGTG | + | 13141274 | 13141281 | -216 | -209 | |||
| AtREG483 | ATGACGTG | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | ||||
| REG | CGACACGTA | + | 13141317 | 13141325 | -173 | -165 | |||
| AtREG478 | CGACACGT | ABA, DREB1Aox, Drought | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| AtREG557 | GACACGTA | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||