PlantPromoterDB promoter information of AT2G31980

Summary of Gene (AT2G31980)

Organism	Arabidopsis thaliana
Chromosome	2
Locus	AT2G31980 TAIR NCBI
Gene model	AT2G31980
Description	cysteine proteinase inhibitor-related; FUNCTIONS IN: cysteine-type endopeptidase inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I25, cystatin, conserved site (InterPro:IPR018073), Proteinase inhibitor I25, cystatin (InterPro:IPR000010); BEST Arabidopsis thaliana protein match is: cysteine protease inhibitor, putative / cystatin, putative (TAIR:AT3G12490.2); Has 396 Blast hits to 391 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 386; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

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Overview

Focused view (chromosome 2: 13600670-13599471)

`Genome position from initiation codon` `TSS from cDNA TSS information AT2G31980 5'->3' (-) Promoter sequence AT2G31960.1 AT2G31970.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT2G31980

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone peak A clone - 13609899 -129

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone peak	`A`	clone	-	13609899	-129

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG None None None

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	None	None	None

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak C 4 + 13599889 AT2G31970.1

TSS peak A 4 + 13600527 AT2G31970.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`C`	4	+	13599889	AT2G31970.1
TSS peak	`A`	4	+	13600527	AT2G31970.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone A clone + 13600527 AT2G31970.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`A`	clone	+	13600527	AT2G31970.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CGTCTTCT + 13600490 13600497 AT2G31970.1

Y Patch TTCCTTCTTCTTCC + 13600513 13600526 AT2G31970.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CGTCTTCT`	+	13600490	13600497	AT2G31970.1
Y Patch	`TTCCTTCTTCTTCC`	+	13600513	13600526	AT2G31970.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG TTCGGTTTAA + 13600236 13600245 AT2G31970.1

AtREG568 TTCGGTTT   PPDB Motif AACCG(G/A) PLACE Motif

AtREG514 TCGGTTTA PPDB Motif AACCG(G/A) PLACE Motif

AtREG473   CGGTTTAA PPDB Motif AACCG(G/A) PLACE Motif

REG CGGTTTGG + 13600267 13600274 AT2G31970.1

AtREG550 CGGTTTGG PPDB Motif AACCG(G/A) PLACE Motif

REG TTGACTTT + 13600282 13600289 AT2G31970.1

AtREG632 TTGACTTT PPDB Motif PLACE Motif TTGAC

REG ACCGGTTCAA + 13600441 13600450 AT2G31970.1

AtREG528 ACCGGTTC   PPDB Motif AACCG(G/A) PLACE Motif

AtREG480 CCGGTTCA PPDB Motif AACCG(G/A) PLACE Motif

AtREG640   CGGTTCAA PPDB Motif AACCG(G/A) PLACE Motif

REG ATAAACCGGTC + 13600464 13600474 AT2G31970.1

AtREG598 ATAAACCG    PPDB Motif AACCG(G/A) PLACE Motif

AtREG412 TAAACCGG   PPDB Motif AACCG(G/A) PLACE Motif

AtREG436   AAACCGGT PPDB Motif AACCG(G/A) PLACE Motif

AtREG552    AACCGGTC PPDB Motif AACCG(G/A) PLACE Motif