Summary of Gene (AT2G31980)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT2G31980 5'->3' (-) Promoter sequence AT2G31960.1
AT2G31970.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | - | 13609899 | -129 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | None | None | None |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 4 | + | 13600527 | AT2G31970.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | + | 13600527 | AT2G31970.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CGTCTTCT | + | 13600490 | 13600497 | AT2G31970.1 | |
Y Patch | TTCCTTCTTCTTCC | + | 13600513 | 13600526 | AT2G31970.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TTCGGTTTAA | + | 13600236 | 13600245 | AT2G31970.1 | ||||
AtREG568 | TTCGGTTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG514 | TCGGTTTA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG473 | CGGTTTAA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | CGGTTTGG | + | 13600267 | 13600274 | AT2G31970.1 | ||||
AtREG550 | CGGTTTGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | TTGACTTT | + | 13600282 | 13600289 | AT2G31970.1 | ||||
AtREG632 | TTGACTTT | PPDB Motif |   | PLACE Motif | TTGAC  | ||||
REG | ACCGGTTCAA | + | 13600441 | 13600450 | AT2G31970.1 | ||||
AtREG528 | ACCGGTTC | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG480 | CCGGTTCA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG640 | CGGTTCAA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | ATAAACCGGTC | + | 13600464 | 13600474 | AT2G31970.1 | ||||
AtREG598 | ATAAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG412 | TAAACCGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG436 | AAACCGGT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG552 | AACCGGTC | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |