PlantPromoterDB promoter information of AT2G32520.1

Summary of Gene (AT2G32520.1)

Organism	Arabidopsis thaliana
Chromosome	2
Locus	AT2G32520 TAIR NCBI
Gene model	AT2G32520.1
Description	dienelactone hydrolase family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase (InterPro:IPR002155), Dienelactone hydrolase (InterPro:IPR002925); BEST Arabidopsis thaliana protein match is: dienelactone hydrolase family protein (TAIR:AT1G35420.1); Has 2362 Blast hits to 2362 proteins in 596 species: Archae - 20; Bacteria - 1757; Metazoa - 54; Fungi - 12; Plants - 53; Viruses - 0; Other Eukaryotes - 466 (source: NCBI BLink).

#

Overview

Focused view (chromosome 2: 13808442-13807243)

`Genome position from initiation codon` `TSS from cDNA TSS information AT2G32520.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT2G32520.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 8 - 13807530 -88

TSS peak A 8 - 13807509 -67

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	8	-	13807530	-88
TSS peak	`A`	8	-	13807509	-67

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone A clone - 13807530 -88

TSS clone T clone - 13807515 -73

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`A`	clone	-	13807530	-88
TSS clone	`T`	clone	-	13807515	-73

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TTCTTCTCTTCTTC - 13807510 13807523 -68 -81

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TTCTTCTCTTCTTC`	-	13807510	13807523	-68	-81
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG GTGTCGTTT - 13807602 13807610 -160 -168

AtREG527 GTGTCGTT DREB1Aox PPDB Motif PLACE Motif

AtREG569 TGTCGTTT PPDB Motif PLACE Motif

REG ACGTCGTCGTTTT - 13807612 13807624 -170 -182

AtREG526 ACGTCGTC      PPDB Motif ACGT PLACE Motif ACGT

AtREG648    TCGTCGTT   PPDB Motif PLACE Motif

AtREG415     CGTCGTTT PPDB Motif PLACE Motif

AtREG520      GTCGTTTT PPDB Motif PLACE Motif

REG TATACCGGGCCCAGA - 13807640 13807654 -198 -212

AtREG629 TATACCGG        PPDB Motif PLACE Motif

AtREG363       GGGCCCAG PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG397        GGCCCAGA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

REG ATTTGGGCCTAATGGCCCATATA - 13807665 13807687 -223 -245

AtREG421 ATTTGGGC                PPDB Motif GCCCA PLACE Motif

AtREG373 TTTGGGCC               PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356   TTGGGCCT              PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG358    TGGGCCTA             PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG360     GGGCCTAA            PPDB Motif GCCCA PLACE Motif GGGCC

AtREG506      GGCCTAAT           PPDB Motif PLACE Motif

AtREG437            ATGGCCCA     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG490             TGGCCCAT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG364              GGCCCATA   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG432               GCCCATAT PPDB Motif GCCCA PLACE Motif

AtREG620                CCCATATA PPDB Motif GCCCA PLACE Motif

REG GGCTTTTT - 13807762 13807769 -320 -327

AtREG589 GGCTTTTT PPDB Motif PLACE Motif

REG TAATTGGG - 13807804 13807811 -362 -369

AtREG600 TAATTGGG PPDB Motif GCCCA PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`GTGTCGTTT`		-	13807602	13807610	-160	-168
	AtREG527	`GTGTCGTT`	DREB1Aox	PPDB Motif		PLACE Motif
	AtREG569	`TGTCGTTT`		PPDB Motif		PLACE Motif
REG	`ACGTCGTCGTTTT`		-	13807612	13807624	-170	-182
	AtREG526	`ACGTCGTC`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT`
	AtREG648	`TCGTCGTT`		PPDB Motif		PLACE Motif
	AtREG415	`CGTCGTTT`		PPDB Motif		PLACE Motif
	AtREG520	`GTCGTTTT`		PPDB Motif		PLACE Motif
REG	`TATACCGGGCCCAGA`		-	13807640	13807654	-198	-212
	AtREG629	`TATACCGG`		PPDB Motif		PLACE Motif
	AtREG363	`GGGCCCAG`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG397	`GGCCCAGA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
REG	`ATTTGGGCCTAATGGCCCATATA`		-	13807665	13807687	-223	-245
	AtREG421	`ATTTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG373	`TTTGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG356	`TTGGGCCT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG358	`TGGGCCTA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG360	`GGGCCTAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG506	`GGCCTAAT`		PPDB Motif		PLACE Motif
	AtREG437	`ATGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG490	`TGGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG364	`GGCCCATA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG432	`GCCCATAT`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG620	`CCCATATA`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`GGCTTTTT`		-	13807762	13807769	-320	-327
	AtREG589	`GGCTTTTT`		PPDB Motif		PLACE Motif
REG	`TAATTGGG`		-	13807804	13807811	-362	-369
	AtREG600	`TAATTGGG`		PPDB Motif	`GCCCA`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None