PlantPromoterDB promoter information of AT2G34420.1
Summary of Gene (AT2G34420.1)
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Overview
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Focused view (chromosome 2: 14524513-14523314)
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Genome position
from initiation codon TSS from cDNA TSS information AT2G34420.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G34420.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 2484 | - | 14523564 | -51 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 14523568 | -55 |
| TSS clone | A | clone | - | 14523567 | -54 |
| TSS clone | T | clone | - | 14523566 | -53 |
| TSS clone | C | clone | - | 14523565 | -52 |
| TSS clone | A | clone | - | 14523564 | -51 |
| TSS clone | C | clone | - | 14523563 | -50 |
| TSS clone | T | clone | - | 14523562 | -49 |
| TSS clone | C | clone | - | 14523557 | -44 |
| TSS clone | C | clone | - | 14523556 | -43 |
| TSS clone | A | clone | - | 14523555 | -42 |
| TSS clone | G | clone | - | 14523554 | -41 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TTGCTATAAAG | - | 14523593 | 14523603 | -80 | -90 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | ACACGTCAG | + | 14524483 | 14524491 | AT2G34430.1 | ||||
| AtREG517 | ACACGTCA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| AtREG440 | CACGTCAG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||