PlantPromoterDB promoter information of AT2G34430
Summary of Gene (AT2G34430)
|
Overview
|
Focused view (chromosome 2: 14523468-14524667)
|
Genome position
from initiation codon TSS from cDNA TSS information AT2G34430 5'->3' (+) Promoter sequence AT2G34420.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT2G34430
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 461 | + | 14524756 | -62 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | + | 14524746 | -72 |
| TSS clone | G | clone | + | 14524753 | -65 |
| TSS clone | C | clone | + | 14524754 | -64 |
| TSS clone | A | clone | + | 14524756 | -62 |
| TSS clone | T | clone | + | 14524757 | -61 |
| TSS clone | C | clone | + | 14524758 | -60 |
| TSS clone | A | clone | + | 14524760 | -58 |
| TSS clone | A | clone | + | 14524761 | -57 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | GTTATAAATA | + | 14524720 | 14524729 | -98 | -89 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ACACGTCAG | + | 14524483 | 14524491 | -335 | -327 | |||
| AtREG517 | ACACGTCA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| AtREG440 | CACGTCAG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 2484 | - | 14523564 | AT2G34420.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | A | clone | - | 14523568 | AT2G34420.1 |
| TSS clone | A | clone | - | 14523567 | AT2G34420.1 |
| TSS clone | T | clone | - | 14523566 | AT2G34420.1 |
| TSS clone | C | clone | - | 14523565 | AT2G34420.1 |
| TSS clone | A | clone | - | 14523564 | AT2G34420.1 |
| TSS clone | C | clone | - | 14523563 | AT2G34420.1 |
| TSS clone | T | clone | - | 14523562 | AT2G34420.1 |
| TSS clone | C | clone | - | 14523557 | AT2G34420.1 |
| TSS clone | C | clone | - | 14523556 | AT2G34420.1 |
| TSS clone | A | clone | - | 14523555 | AT2G34420.1 |
| TSS clone | G | clone | - | 14523554 | AT2G34420.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TTGCTATAAAG | - | 14523593 | 14523603 | AT2G34420.1 | |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||