Summary of Gene (AT2G34430)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT2G34430 5'->3' (+) Promoter sequence AT2G34450.1
AT2G34450.2 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 461 | + | 14524756 | -62 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | + | 14524746 | -72 |
TSS clone | G | clone | + | 14524753 | -65 |
TSS clone | C | clone | + | 14524754 | -64 |
TSS clone | A | clone | + | 14524756 | -62 |
TSS clone | T | clone | + | 14524757 | -61 |
TSS clone | C | clone | + | 14524758 | -60 |
TSS clone | A | clone | + | 14524760 | -58 |
TSS clone | A | clone | + | 14524761 | -57 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | GTTATAAATA | + | 14524720 | 14524729 | -98 | -89 |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ACACGTCAG | + | 14524483 | 14524491 | -335 | -327 | |||
AtREG517 | ACACGTCA | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | |||
AtREG440 | CACGTCAG | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |