PlantPromoterDB promoter information of AT2G34430
Summary of Gene (AT2G34430)
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Overview
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Focused view (chromosome 2: 14529168-14530367)
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Genome position
from initiation codon TSS from cDNA TSS information AT2G34430 5'->3' (+) Promoter sequence AT2G34450.1
AT2G34450.2 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G34430
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 461 | + | 14524756 | -62 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | + | 14524746 | -72 |
| TSS clone | G | clone | + | 14524753 | -65 |
| TSS clone | C | clone | + | 14524754 | -64 |
| TSS clone | A | clone | + | 14524756 | -62 |
| TSS clone | T | clone | + | 14524757 | -61 |
| TSS clone | C | clone | + | 14524758 | -60 |
| TSS clone | A | clone | + | 14524760 | -58 |
| TSS clone | A | clone | + | 14524761 | -57 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | GTTATAAATA | + | 14524720 | 14524729 | -98 | -89 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ACACGTCAG | + | 14524483 | 14524491 | -335 | -327 | |||
| AtREG517 | ACACGTCA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| AtREG440 | CACGTCAG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 21 | + | 14529627 | AT2G34460.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | A | clone | + | 14529622 | AT2G34460.1 |
| TSS clone | G | clone | + | 14529624 | AT2G34460.1 |
| TSS clone | T | clone | + | 14529632 | AT2G34460.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | AAAAAGCC | + | 14529337 | 14529344 | AT2G34460.1 | ||||
| AtREG589 | AAAAAGCC | PPDB Motif | PLACE Motif | ||||||
| REG | CAAAGGCCC | + | 14529416 | 14529424 | AT2G34460.1 | ||||
| AtREG656 | CAAAGGCC | PPDB Motif | PLACE Motif | ||||||
| AtREG359 | AAAGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| REG | CGTCATTT | + | 14529443 | 14529450 | AT2G34460.1 | ||||
| AtREG657 | CGTCATTT | PPDB Motif | PLACE Motif | ||||||
| REG | TTGCCACGTGGCGT | + | 14529539 | 14529552 | AT2G34460.1 | ||||
| AtREG452 | TTGCCACG | PPDB Motif | PLACE Motif | GCCAC | |||||
| AtREG379 | TGCCACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
| AtREG367 | GCCACGTGGC | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC | |||
| AtREG371 | ACGTGGCG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
| AtREG508 | CGTGGCGT | PPDB Motif | PLACE Motif | GCCAC | |||||