PlantPromoterDB promoter information of AT2G34440.1

Summary of Gene (AT2G34440.1)

Organism	Arabidopsis thaliana
Chromosome	2
Locus	AT2G34440 TAIR NCBI
Gene model	AT2G34440.1
Description	AGAMOUS-LIKE 29 (AGL29); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL91; transcription factor (TAIR:AT3G66656.1); Has 4299 Blast hits to 4298 proteins in 558 species: Archae - 0; Bacteria - 2; Metazoa - 549; Fungi - 208; Plants - 3488; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).

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Overview

Focused view (chromosome 2: 14523300-14524499)

`Genome position from initiation codon` `TSS from cDNA TSS information AT2G34440.1 5'->3' (+) Promoter sequence AT2G34420.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT2G34440.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG None None None

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	None	None	None

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 2484 - 14523564 AT2G34420.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	2484	-	14523564	AT2G34420.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone A clone - 14523568 AT2G34420.1

TSS clone A clone - 14523567 AT2G34420.1

TSS clone T clone - 14523566 AT2G34420.1

TSS clone C clone - 14523565 AT2G34420.1

TSS clone A clone - 14523564 AT2G34420.1

TSS clone C clone - 14523563 AT2G34420.1

TSS clone T clone - 14523562 AT2G34420.1

TSS clone C clone - 14523557 AT2G34420.1

TSS clone C clone - 14523556 AT2G34420.1

TSS clone A clone - 14523555 AT2G34420.1

TSS clone G clone - 14523554 AT2G34420.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`A`	clone	-	14523568	AT2G34420.1
TSS clone	`A`	clone	-	14523567	AT2G34420.1
TSS clone	`T`	clone	-	14523566	AT2G34420.1
TSS clone	`C`	clone	-	14523565	AT2G34420.1
TSS clone	`A`	clone	-	14523564	AT2G34420.1
TSS clone	`C`	clone	-	14523563	AT2G34420.1
TSS clone	`T`	clone	-	14523562	AT2G34420.1
TSS clone	`C`	clone	-	14523557	AT2G34420.1
TSS clone	`C`	clone	-	14523556	AT2G34420.1
TSS clone	`A`	clone	-	14523555	AT2G34420.1
TSS clone	`G`	clone	-	14523554	AT2G34420.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box TTGCTATAAAG - 14523593 14523603 AT2G34420.1

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`TTGCTATAAAG`	-	14523593	14523603	AT2G34420.1
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG ACACGTCAG + 14524483 14524491 AT2G34430.1

AtREG517 ACACGTCA ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG

AtREG440 CACGTCAG ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG