PlantPromoterDB promoter information of AT2G34470.1
Summary of Gene (AT2G34470.1)
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Overview
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Focused view (chromosome 2: 14537561-14536362)
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Genome position
from initiation codon TSS from cDNA TSS information AT2G34470.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G34470.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 26 | - | 14532467 | -56 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 14532980 | -569 |
| TSS clone | C | clone | - | 14532472 | -61 |
| TSS clone | A | clone | - | 14532470 | -59 |
| TSS clone | G | clone | - | 14532469 | -58 |
| TSS clone | A | clone | - | 14532467 | -56 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGGGTATT | - | 14532578 | 14532585 | -167 | -174 | |||
| AtREG614 | GGGGTATT | PPDB Motif | ACCCCT | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 33 | - | 14537432 | AT2G34490.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | A | clone | - | 14537428 | AT2G34490.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CCCTTATATATT | - | 14537457 | 14537468 | AT2G34490.1 | |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | CCAGGCCC | - | 14537484 | 14537491 | AT2G34490.1 | ||||
| AtREG619 | CCAGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||