Summary of Gene (AT2G34490)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AT2G34450.2 TSS from cDNA TSS information AT2G34490 5'->3' (-) Promoter sequence AT2G34460.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 33 | - | 14537432 | -59 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 14537428 | -55 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CCCTTATATATT | - | 14537457 | 14537468 | -84 | -95 |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCAGGCCC | - | 14537484 | 14537491 | -111 | -118 | |||
AtREG619 | CCAGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 21 | + | 14529627 | AT2G34460.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | + | 14529622 | AT2G34460.1 |
TSS clone | G | clone | + | 14529624 | AT2G34460.1 |
TSS clone | T | clone | + | 14529632 | AT2G34460.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | AAAAAGCC | + | 14529337 | 14529344 | AT2G34460.1 | ||||
AtREG589 | AAAAAGCC | PPDB Motif |   | PLACE Motif |   | ||||
REG | CAAAGGCCC | + | 14529416 | 14529424 | AT2G34460.1 | ||||
AtREG656 | CAAAGGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG359 | AAAGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
REG | CGTCATTT | + | 14529443 | 14529450 | AT2G34460.1 | ||||
AtREG657 | CGTCATTT | PPDB Motif |   | PLACE Motif |   | ||||
REG | TTGCCACGTGGCGT | + | 14529539 | 14529552 | AT2G34460.1 | ||||
AtREG452 | TTGCCACG | PPDB Motif |   | PLACE Motif | GCCAC  | ||||
AtREG379 | TGCCACGT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | |||
AtREG367 | GCCACGTGGC | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC  | |||
AtREG371 | ACGTGGCG | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | |||
AtREG508 | CGTGGCGT | PPDB Motif |   | PLACE Motif | GCCAC  | ||||
REG | GGCCTTAC | - | 14530430 | 14530437 | AT2G34450.1, AT2G34450.2 | ||||
AtREG530 | GGCCTTAC | PPDB Motif |   | PLACE Motif |   |