Summary of Gene (AT2G34490)
|
Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT2G34490 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 33 | - | 14537432 | -59 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 14537428 | -55 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CCCTTATATATT | - | 14537457 | 14537468 | -84 | -95 |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCAGGCCC | - | 14537484 | 14537491 | -111 | -118 | |||
AtREG619 | CCAGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | T | clone | - | 14532980 | AT2G34470.1, AT2G34470.2 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | GGGGTATT | - | 14532578 | 14532585 | AT2G34470.1, AT2G34470.2 | ||||
AtREG614 | GGGGTATT | PPDB Motif | ACCCCT  | PLACE Motif |   |