PlantPromoterDB promoter information of AT2G34490
Summary of Gene (AT2G34490)
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Overview
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Focused view (chromosome 2: 14534573-14533374)
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Genome position
from initiation codon TSS from cDNA TSS information AT2G34490 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G34490
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 33 | - | 14537432 | -59 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 14537428 | -55 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CCCTTATATATT | - | 14537457 | 14537468 | -84 | -95 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CCAGGCCC | - | 14537484 | 14537491 | -111 | -118 | |||
| AtREG619 | CCAGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | G | 166 | - | 14534201 | AT2G34480.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | T | clone | - | 14534206 | AT2G34480.1 |
| TSS clone | G | clone | - | 14534201 | AT2G34480.1 |
| TSS clone | G | clone | - | 14534200 | AT2G34480.1 |
| TSS clone | T | clone | - | 14534199 | AT2G34480.1 |
| TSS clone | T | clone | - | 14534198 | AT2G34480.1 |
| TSS clone | G | clone | - | 14534197 | AT2G34480.1 |
| TSS clone | A | clone | - | 14534196 | AT2G34480.1 |
| TSS clone | C | clone | - | 14534189 | AT2G34480.1 |
| TSS clone | T | clone | - | 14534179 | AT2G34480.1 |
| TSS clone | T | clone | - | 14534177 | AT2G34480.1 |
| TSS clone | T | clone | - | 14534175 | AT2G34480.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TTTATAAAGA | - | 14534227 | 14534236 | AT2G34480.1 | |
| Y Patch | TCTCTCTCC | - | 14534171 | 14534179 | AT2G34480.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | TTTTGGGC | - | 14534246 | 14534253 | AT2G34480.1 | ||||
| AtREG529 | TTTTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | AGCCCATTGGGCTTTTA | - | 14534278 | 14534294 | AT2G34480.1 | ||||
| AtREG372 | AGCCCATT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG551 | GCCCATTG | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG461 | CATTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG402 | ATTGGGCT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG407 | TTGGGCTT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG376 | TGGGCTTT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG409 | GGGCTTTT | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG549 | GGCTTTTA | PPDB Motif | PLACE Motif | ||||||
| REG | TGGGCTAA | - | 14534313 | 14534320 | AT2G34480.1 | ||||
| AtREG571 | TGGGCTAA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||