PlantPromoterDB promoter information of AT2G34520.1
Summary of Gene (AT2G34520.1)
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Overview
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Focused view (chromosome 2: 14549712-14548513)
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Genome position
from initiation codon AT2G34530.2 TSS from cDNA TSS information AT2G34520.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G34520.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 5 | - | 14548732 | -20 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | - | 14548757 | -45 |
| TSS clone | A | clone | - | 14548756 | -44 |
| TSS clone | T | clone | - | 14548739 | -27 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTTTCTTCTC | - | 14548759 | 14548768 | -47 | -56 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AAAAGGCCCAAT | - | 14548808 | 14548819 | -96 | -107 | |||
| AtREG459 | AAAAGGCC | PPDB Motif | PLACE Motif | ||||||
| AtREG359 | AAAGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG353 | AAGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG356 | AGGCCCAA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG352 | GGCCCAAT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| REG | TAGTGGGCCGAT | - | 14548830 | 14548841 | -118 | -129 | |||
| AtREG532 | TAGTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG393 | TGGGCCGA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG555 | GGGCCGAT | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| REG | TCAAAACG | - | 14548897 | 14548904 | -185 | -192 | |||
| AtREG653 | TCAAAACG | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||