PlantPromoterDB promoter information of AT2G34770
Summary of Gene (AT2G34770)
|
Overview
|
Focused view (chromosome 2: 14665776-14666975)
|
Genome position
from initiation codon TSS from cDNA TSS information AT2G34770 5'->3' (+) Promoter sequence AT2G34760.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT2G34770
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 36 | + | 14665793 | -983 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 14665786 | -990 |
| TSS clone | A | clone | + | 14665787 | -989 |
| TSS clone | C | clone | + | 14665794 | -982 |
| TSS clone | A | clone | + | 14665804 | -972 |
| TSS clone | C | clone | + | 14665816 | -960 |
| TSS clone | G | clone | + | 14665866 | -910 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CAACGGTC | + | 14665730 | 14665737 | -1046 | -1039 | |||
| AtREG553 | CAACGGTC | Auxin | PPDB Motif | CCAACGG | PLACE Motif | YAACKG, CNGTTR | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||