PlantPromoterDB promoter information of AT2G35060
Summary of Gene (AT2G35060)
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Overview
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Focused view (chromosome 2: 14779184-14777985)
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Genome position
from initiation codon AT2G35060.2 TSS from cDNA TSS information AT2G35060 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G35060
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 4 | - | 14778617 | -433 |
| TSS peak | A | 4 | - | 14778611 | -427 |
| TSS peak | A | 4 | - | 14778396 | -212 |
| TSS peak | A | 2 | - | 14778279 | -95 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 14778870 | -686 |
| TSS clone | A | clone | - | 14778866 | -682 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CTTATATAAAGA | - | 14778638 | 14778649 | -454 | -465 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGACCCAC | - | 14778675 | 14778682 | -491 | -498 | |||
| AtREG523 | GGACCCAC | PPDB Motif | GGGACCC | PLACE Motif | |||||
| REG | TCAAAACGC | - | 14778839 | 14778847 | -655 | -663 | |||
| AtREG653 | TCAAAACG | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| AtREG585 | CAAAACGC | PPDB Motif | AAACG(C/G) | PLACE Motif | CAAAACGC | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||