PlantPromoterDB promoter information of AT2G36120
Summary of Gene (AT2G36120)
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Overview
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Focused view (chromosome 2: 15164468-15165667)
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Genome position
from initiation codon TSS from cDNA TSS information AT2G36120 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G36120
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 46 | + | 15165432 | -36 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 15165432 | -36 |
| TSS clone | T | clone | + | 15165433 | -35 |
| TSS clone | T | clone | + | 15165435 | -33 |
| TSS clone | A | clone | + | 15165437 | -31 |
| TSS clone | C | clone | + | 15165438 | -30 |
| TSS clone | A | clone | + | 15165440 | -28 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TGCCTATAAATA | + | 15165397 | 15165408 | -71 | -60 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TGTGGGCCTCAACGTGTGA | + | 15165327 | 15165345 | -141 | -123 | |||
| AtREG612 | TGTGGGCC | DREB1Aox | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | |||
| AtREG482 | GTGGGCCT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG447 | TGGGCCTC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG587 | GGGCCTCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG588 | ACGTGTGA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| REG | ACGCGGTT | + | 15165376 | 15165383 | -92 | -85 | |||
| AtREG441 | ACGCGGTT | Drought | PPDB Motif | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||