PlantPromoterDB promoter information of AT2G36830
Summary of Gene (AT2G36830)
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Overview
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Focused view (chromosome 2: 15444490-15445689)
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Genome position
from initiation codon TSS from cDNA TSS information AT2G36830 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G36830
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 148 | + | 15445429 | -61 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 15445379 | -111 |
| TSS clone | A | clone | + | 15445426 | -64 |
| TSS clone | T | clone | + | 15445430 | -60 |
| TSS clone | A | clone | + | 15445432 | -58 |
| TSS clone | T | clone | + | 15445433 | -57 |
| TSS clone | T | clone | + | 15445483 | -7 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CCGCCACGTAG | + | 15445228 | 15445238 | -262 | -252 | |||
| AtREG560 | CCGCCACG | ABA | PPDB Motif | CCGAC | PLACE Motif | GCCAC | |||
| AtREG371 | CGCCACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
| AtREG413 | GCCACGTA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | ||||
| AtREG495 | CCACGTAG | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | ||||
| REG | TAACCGGTC | + | 15445366 | 15445374 | -124 | -116 | |||
| AtREG503 | TAACCGGT | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
| AtREG552 | AACCGGTC | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||